Changes between Version 8 and Version 9 of EwEugVulnerabilitiesInEcosim


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Timestamp:
2014-02-06 06:44:14 (6 years ago)
Author:
jeroens
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Added vul notes

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  • EwEugVulnerabilitiesInEcosim

    v8 v9  
    11== 3.3 Vulnerabilities in Ecosim == 
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    3 One of the most important features of Ecosim is its ability to allow exploring the implications on system dynamics of different views of how the biomass of different groups in the ecosystem is controlled.  The two extreme views are 'predator' control' (also called top-down control) and 'prey control' (or bottom-up). We model this using 'vulnerabilities,' which represent the degree to which a large increase in predator biomass will cause in predation mortality for a given prey. Low vulnerability (close to 1) means that an increase in predator biomass will not cause any noticeable increase in the predation mortality the predator may cause on the given prey (see Figure 3.1). A high vulnerability, e.g., of 100, indicates that if the predator biomass is for instance doubled, it will cause close to a doubling in the predation mortality it causes for a given prey. 
     2One of the most important features of Ecosim is its ability to allow exploring the implications on system dynamics of different views of how the biomass of different groups in the ecosystem is controlled.  The two extreme views are 'predator' control' (also called top-down control) and 'prey control' (or bottom-up). We model this using 'vulnerabilities,' which represent the degree to which a large increase in predator biomass will cause in predation mortality for a given prey. Low vulnerability (close to 1) means that an increase in predator biomass will not cause any noticeable increase in the predation mortality the predator may cause on the given prey (see Figure 3.1). A high vulnerability, e.g., of 100, indicates that if the predator biomass is for instance doubled, it will cause close to a doubling in the predation mortality it causes for a given prey. 
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    54If we illustrate the relationship between predator biomass and ''Q/B'' (this is not an assumption in the actual Ecosim calculations) and assume that the predator in question does not cause any substantial (actually no) change in the prey biomass, we can calculate the relative ''Q/B'' for the predator (see Figure 3.1). For higher predator biomass a change will result in relatively stable predation mortality. Hence, if biomass is impacted so as to cause a reduction, the individual predators will get more, their ''Q/B'' increase and this will largely compensate for the reduction in their abundance, bringing the biomass back up again. At lower biomass ''Q/B'' will also increase, but to a lower degree. This is illustrated in Figure 3.2 showing how halving or doubling the predator biomass will impact the relative ''Q/B''. At high biomasses, halving biomass results in close to a doubling in ''Q/B'', which will tend to keep biomass high. There is, however, less and less relative surplus production as we move to the left on the curve. If biomasses are doubled instead, the ''Q/B'' will be decreased when biomasses are high, resulting in a decrease in biomass back toward the original level, i.e., the biomasses will be stable when close to carrying capacity (where v's are low), and unstable when far below carrying capacity (where v's are high). 
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    7 If vulnerabilities are high, the amount of prey consumed by the predator is the product of predator x prey biomass, i.e., the predator biomass impact how much of the prey is consumed.  Such situation may occur in situation where the prey has no refuge, and is thus always taken upon being encountered by a predator. Such top-down control, also known as Lotka-Volterra dynamics, easily leads to rapid oscillations of prey and predator biomasses and/or unpredictable behaviour. 
     6If vulnerabilities are high, the amount of prey consumed by the predator is the product of predator x prey biomass, i.e., the predator biomass impact how much of the prey is consumed.  Such situation may occur in situation where the prey has no refuge, and is thus always taken upon being encountered by a predator. Such top-down control, also known as Lotka-Volterra dynamics, easily leads to rapid oscillations of prey and predator biomasses and/or unpredictable behaviour. 
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    9 The converse (bottom-up control) is the situation that occurs when a prey is protected most of the time, (e.g., by hiding in crevices) and becomes available to predators only when it leaves the feature that protects it. Here being caught is a function of the prey's behaviour.  Bottom-up control usually leads to unrealistically little biomass changes in the prey and predator(s) concerned, but which usually do not propagate through the other elements of a food web. 
     8The converse (bottom-up control) is the situation that occurs when a prey is protected most of the time, (e.g., by hiding in crevices) and becomes available to predators only when it leaves the feature that protects it. Here being caught is a function of the prey's behaviour.  Bottom-up control usually leads to unrealistically little biomass changes in the prey and predator(s) concerned, but which usually do not propagate through the other elements of a food web. 
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    1110To model this aspect of predator-prey interactions, the group biomasses (B) on the underlying Ecopath model were reconceived in Ecosim as consisting of two components, one vulnerable, the other invulnerable to predation (B' and V, respectively in Figure 3.3). Further, it is assumed that there is a flow (''v,,ij,,'') of organisms from the invulnerable to the vulnerable stage, and conversely (''v,,ji,,''), with the assumption v = ''v,,ij,,'' = ''v,,ji,,''. 
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    13 As might be seen in Figure 3.3, when v is high, the rapid replenishment of vulnerable biomass depleted by predator will rapidly drain the invulnerable part of the biomass.  Thus, with v set high, predation control will be top down. Conversely, if v is low, replacement of depleted biomass from the invulnerable to the vulnerable part of the population will be slow, and the amount that the predators consume will be largely determined by the low value of v, rather than by their own biomass.  Thus, when v is low, control is bottom up. 
     12As might be seen in Figure 3.3, when v is high, the rapid replenishment of vulnerable biomass depleted by predator will rapidly drain the invulnerable part of the biomass.  Thus, with v set high, predation control will be top down. Conversely, if v is low, replacement of depleted biomass from the invulnerable to the vulnerable part of the population will be slow, and the amount that the predators consume will be largely determined by the low value of v, rather than by their own biomass. Thus, when v is low, control is bottom up. 
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    15 The vulnerability parameters are among the most important parameters that users change to improve the agreement of the model's predictions with historical data (see [EwEugTimeSeriesFittingInEcosimEvaluatingFisheriesAndEnvironmentalEffects Time series fitting in Ecosim], [EwEugHintsForFittingModelsToTimeSeriesReferenceData Hints for fitting models to time series reference data] and [EwEugEffectsOfPbZandVulnerabilityForTimeSeriesFitting Effect of P/B (Z) and vulnerability for time series fitting]). See [EwEugVulnerabilitiesFlowControl Vulnerabilities] for help on setting vulnerabilities in Ecosim. See [EwEugFitToTimeSeries Fit to time series] for help with Ecosim's parameter search interface. 
     14The vulnerability parameters are among the most important parameters that users change to improve the agreement of the model's predictions with historical data (see [wiki:EwEugTimeSeriesFittingInEcosimEvaluatingFisheriesAndEnvironmentalEffects Time series fitting in Ecosim], [wiki:EwEugHintsForFittingModelsToTimeSeriesReferenceData Hints for fitting models to time series reference data] and [wiki:EwEugEffectsOfPbZandVulnerabilityForTimeSeriesFitting Effect of P/B (Z) and vulnerability for time series fitting]). See [wiki:EwEugVulnerabilitiesFlowControl Vulnerabilities] for help on setting vulnerabilities in Ecosim. See [wiki:EwEugFitToTimeSeries Fit to time series] for help with Ecosim's parameter search interface. 
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    1716Further reading: Walters and Juanes (1993), Walters et al. (1997), Walters and Korman 1999, and Walters and Martell (2004). 
     
    2928'''Figure 3.3''' Simulation of flow between available (''V,,i,,'') and unavailable (''B,,i,, - V,,i,,'') prey biomass in Ecosim. ''a,,ij,,'' is the predator search rate for prey ''i'', ''v'' is the exchange rate between the vulnerable and not-vulnerable state. Fast equilibrium between the two prey states implies ''V,,i,,'' = ''vB,,i,,'' / (''2v'' + ''aB,,j,,''). Based on Walters et al. (1997). 
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    31 ==== Comment by jeroens on 2/6/2014 6:42:23 AM ==== 
    32 '''Note from Carl Walters about vulnerabilities and the EwE user interface''' 
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     30==== Comment by Carl Walters on 2/6/2014 6:42:23 AM ==== 
     31= '''Note from about vulnerabilities and the EwE user interface''' = 
    3432The numbers that appear in the ecosim interface are vulnerability exchange "multipliers", not the rates.  If the ecopath base predation rate for a link is Mij=Qij/Bi (base flow rate of biomass to the predator divided by prey biomass), the vulnerability exchange rate (vij) for that link is set to the interface multiplier kij times Mij, i.e. the input multiplier kij is the ratio vij/Mij so vij=kijMij, i.e. the maximum predation mortality rate at very high predator density divided by the ecopath base rate.  Very high multipliers imply that the foraging arena biomass flow rate equation Qij=aijvijBiBj/(2vij+aijBj) approaches the mass-action (Lotka-Volterra rate Qij=aijBiBj.  Note of course that for most models, the aij and vij are further modified over time to account for changes in predator and prey foraging times, possibly handling times (type II responses), and other user-defined forcing factors. 
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    3836We use the kij interface option rather than allowing users to directly enter vijs for two reasons: (1) in order for the initial ecopath biomasses to be near equilibrium, vij must be set to at least Mij (otherwise the model predicts initial consumption flows Qij below the ecopath base values), and (2) it is much easier for most users to think predation rate limits by thinking about how much larger Mij might ever be than its initial ecopath base value.  So if we didn't use the multiplier parameterization, users would have to go through messy independent analyses in order to provide reasonable direct settings for the vij. 
    3937 
    40 It is always difficult to specify reasonable kij values for ecological linkages involving non-exploited species; typically we must resort to thinking about the fine-scale spatial structure of the trophic interaction, in particular whether only a small proportion of the prey are exposed to predation at any moment e.g. as occurs with fish feeding on benthic invertebrates that are mostly hidden from sight at any moment.  For exploited species, we can often obtain better kij estimates by noting that kij represents not only the upper limit on how much food these species can get, but also how much higher their percapita consumption rates can get when they are less abundant, i.e. how strong their compensatory response is to reduction by fishing; very low kij values imply very strong compensatory responses, i.e. big increases in Qij/Bj=aijvijBi/(2vij+aijBj) as Bj decreases.  Note that ecosim allows users to specify in low kij cases whether the predator just realizes higher per-capita consumption rates Qij/Bj as Bj decreases, or instead translates the potential increase in food intake rate into reduced foraging time and hence reduced vulnerability to its predators (actually a more common response, especially in juvenile fish, than increased growth rate). 
     38It is always difficult to specify reasonable kij values for ecological linkages involving non-exploited species; typically we must resort to thinking about the fine-scale spatial structure of the trophic interaction, in particular whether only a small proportion of the prey are exposed to predation at any moment e.g. as occurs with fish feeding on benthic invertebrates that are mostly hidden from sight at any moment.  For exploited species, we can often obtain better kij estimates by noting that kij represents not only the upper limit on how much food these species can get, but also how much higher their percapita consumption rates can get when they are less abundant, i.e. how strong their compensatory response is to reduction by fishing; very low kij values imply very strong compensatory responses, i.e. big increases in ''Qij/Bj=aijvijBi/(2vij+aijBj)'' as Bj decreases.  Note that ecosim allows users to specify in low kij cases whether the predator just realizes higher per-capita consumption rates ''Qij/Bj ''as Bj decreases, or instead translates the potential increase in food intake rate into reduced foraging time and hence reduced vulnerability to its predators (actually a more common response, especially in juvenile fish, than increased growth rate). 
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